This page contains links to directories containing raw and processed data released as part of the ENCODE production phase (September 2007 - December 2012). Formats are described on the File Format FAQ. For bulk download, retrieval by FTP is recommended along with rsync. Using rsync, for example "rsync -a -P rsync://hgdownload.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeDir/wgEncodeFile ./", has the advantage of starting up where it left off after a failure, when ran again. Production data files are covered by the ENCODE data release policy. Links in the blue sections below show descriptions of the data as tracks in the UCSC Genome Browser.
The ENCODE Analysis Working Group (AWG) is a cross-consortium effort to perform integrated analysis of all ENCODE data types based on uniform processing. In September 2012 the results of AWG analysis of data produced from September 2007 through January 2011 were published in a series of coordinated publications. Resulting files from the uniform processing reported in these publications are hosted on the ENCODE Analysis Data Hub for download and visualization in the UCSC Browser. Visit the ENCODE Integrative Analysis and Quality Metrics pages for more information.